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ODN 2395 - TLR9 ligand

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ODN 2395

CpG ODN, Class C (human/mouse) - TLR9 agonist

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200 µg

1 mg

5 mg

Bulk

tlrl-2395
+-
$214

Class C CpG oligonucleotide - Human/Mouse TLR9-preferred ligand

TLR9 activation with ODN 2395
TLR9 activation with ODN 2395

ODN 2395 is a Class C CpG oligonucleotide (ODN), specific for the human and murine Toll-like receptor 9 (TLR9) [1]. It is a short synthetic single-stranded DNA molecule containing unmethylated CpG dinucleotides (CpG motifs). These unmethylated CpG motifs mimic microbial DNA and act as immunostimulants via TLR9. 

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Mode of action

Stimulatory CpG ODNs are internalized and activate the endosomal receptor TLR9. Activation of TLR9 triggers NF-κB- and interferon regulatory factor (IRF)-mediated pro-inflammatory responses upon the recognition of unmethylated cytosine-phosphorothioate-guanosine (CpG) forms of DNA [2-4]. Unmethylated CpG dinucleotides are a hallmark of microbial (bacterial, viral, fungal, and parasite) DNA and mitochondrial self-DNA [4, 5]. Class C CpG ODNs, such as ODN 2395, combine classes A and B features. They contain a complete phosphorothioate (PS) backbone and a CpG-containing palindromic motif. They strongly induce B cell stimulation as well as IFN-α production in plasmacytoid dendritic cells [6]. 

InvivoGen's ODN 2395 is a strong TLR9 agonist as verified using our HEK-Blue™ reporter cell lines expressing human or mouse TLR9 (see figure)Moreover, ODN 2395 activates the hTLR9-dependent NF-κB and IRF pathways, as assessed using our THP1-Dual™ hTLR9 reporter cell line expressing two reporter genes, for the NF-κB-inducible SEAP and IRF-inducible Lucia luciferase, as well as hTLR9 (see figure). 

 

Key features of ODN 2395

  • Potent activator of human and mouse TLR9
  • Synthetic ODN with unmethylated CpG motifs
  • Each lot is functionally tested
  • High-quality, pre-clinical ODN 2395 VacciGrade™ is also available for in vivo studies

 

Get more information about CpG ODNs Classes.

Read our review Read our review on TLR9 agonists: double-edged sword for immune therapies.

 

 

References

1. Roda JM. et al., 2005. CpG-containing oligodeoxynucleotides act through TLR9 to enhance the NK cell cytokine response to antibodycoated tumor cells. J Immunol. 175(3):1619-27.
2. Kumagai Y. et al., 2008. TLR9 as a key receptor of the recognition of DNA. Adv. Drug. Deliv. Rev. 60(7):795-804.
3. Heinz L.X. et al., 2021. TASL is the SLC15A4-associated adaptor for IRF5 activation by TLR7-9. Nature. 581(7808):316-322.
4. Kayraklioglu N. et al., 2021. CpG oligonucleotides as vaccine adjuvants. DNA Vaccines: Methods and Protocols. Methods in Molecular Biology. Vol. 2197. p51-77.
5. Kumar V., 2021. The trinity of cGAS, TLR9, and ALRs: guardians of the cellular galaxy against host-derived self-DNA. Front. Immunol. 11:624597.
6. Jurk M. et al., 2004. C-Class CpG ODN: sequence requirements and characterization of immunostimulatory activities on mRNA level. Immunobiology. 209(1-2):141-54.

Figures

NF-κB response in HEK-Blue™-derived cells upon ODN 1395 stimulation
NF-κB response in HEK-Blue™-derived cells upon ODN 1395 stimulation

Dose-dependent NF-κB response in HEK-Blue™-derived cells. HEK-Blue™ hTLR9 and HEK-Blue™ mTLR9 cells were incubated with increasing concentrations of ODN 2395. After 24h, the TLR9-induced NF‑κB responses were assessed by measuring the SEAP activity using QUANTI-Blue™. Data are shown as optical density (OD) at 650 nm (mean + SEM).

NF-κB and IRF response upon ODN 2395 stimulation
NF-κB and IRF response upon ODN 2395 stimulation

Dose-dependent NF-κB and IRF responses in THP1-Dual™ hTLR9 cells. Cells were incubated with increasing concentrations of ODN 2395. After 24h, the hTLR9-induced (A) NF‑κB and (B) IRF responses were assessed by measuring SEAP and Lucia activity using QUANTI-Blue™ and QUANTI-Luc™, respectively. Data are shown as optical density (OD) at 650 nm or in fold increase over non-induced cells (mean + SEM).

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Specifications

Specificity: human/murine TLR9 agonist

Working concentration: 1-5 µM

Solubility:  5 mg/ml in water

ODN 2395 sequence
5’-tcgtcgttttcggcgc:gcgccg-3’ (22 mer)
Note: Bases are phosphorothioate (nuclease resistant), palindrome is underlined.

Quality control:

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Contents

ODN 2395 is provided lyophilized and is available in three quantities:

 

tlrl-2395 (formerly tlrl-odnc):

  • 200 μg (28.37 nmol) lyophilized ODN 2395
  • 1.5 ml sterile endotoxin-free water

tlrl-2395-1 (formerly tlrl-odnc-1):

  • 1 mg (141.85 nmol):  tlrl-2395-1 (formerly tlrl-odnc-1)
  • 1.5 ml sterile endotoxin-free water

tlrl-2395-5 (formerly tlrl-odnc-5):

  • 5 mg (709.25 nmol):  tlrl-2395-5 (formerly tlrl-odnc-5)
  • 10 ml sterile endotoxin-free water

 

ODN 2395 is shipped at room temperature.

Upon receipt, store at -20°C.

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Details

CpG ODNs

Synthetic oligodeoxynucleotides containing unmethylated CpG motifs (CpG ODNs), such as ODN 1018, have been extensively studied as adjuvants [1]. These CpG motifs are present at a 20-fold greater frequency in bacterial DNA compared to mammalian DNA [2]. CpG ODNs are recognized by the Toll-like receptor 9 (TLR9), which is expressed on human B cells and plasmacytoid dendritic cells (pDCs), thereby inducing Th1-dominated immune responses [3]. Pre-clinical studies, conducted in rodents and non-human primates, as well as human clinical trials, have demonstrated that CpG ODNs can significantly improve vaccine-specific antibody responses [1]. Three types of stimulatory CpG ODNs have been identified, types A, B, and C, which differ in their immune-stimulatory activities [4-5]. 

 

Toll-like receptor 9

The Toll-like Receptor 9 (TLR9) is an endosomal receptor that triggers NF-κB- and interferon regulatory factor (IRF)-mediated pro-inflammatory responses upon the recognition of unmethylated cytosine-phosphorothioate-guanosine (CpG) forms of DNA [6-8]. Unmethylated CpG dinucleotides are a hallmark of microbial (bacterial, viral, fungal, and parasite) DNA, as well as mitochondrial self-DNA [8,9]. These TLR9 agonists can be mimicked by synthetic oligonucleotides containing CpG motifs (CpG ODNs), which have been extensively studied to improve adaptive immune responses in the context of vaccination [6,8].

TLR9 is mainly expressed in subsets of Dendritic Cells and B cells of all mammals. In rodents, but not in humans, TLR9 is also expressed in monocytes and macrophages [8]. The structure of the receptor varies by 24% between human TLR9 (hTLR9) and mouse TLR9 (mTLR9) [8]. They recognize different CpG motifs, the optimal sequences being GTCGTT and GACGTT for hTLR9 and mTLR9, respectively [10].
 

 

References:

1. Steinhagen F. et al., 2011. TLR-based immune adjuvants. Vaccine 29(17):3341-55.
2. Hemmi H. et al., 2000. A Toll-like receptor recognizes bacterial DNA. Nature 408:740-5.
3. Coffman RL. et al., 2010. Vaccine adjuvants: Putting innate immunity to work. Immunity 33(4):492-503.
4. Krug A. et al., 2001. Identification of CpG oligonucleotide sequences with high induction of IFN-alpha/beta in plasmacytoid dendritic cells. Eur J Immunol, 31(7): 2154-63.
5. Marshall JD. et al., 2005. Superior activity of the type C class of ISS in vitro and in vivo across multiple species. DNA Cell Biol. 24(2):63-72.
6. Kumagai Y. et al., 2008. TLR9 as a key receptor of the recognition of DNA. Adv. Drug. Deliv. Rev. 60(7):795-804.
7. Heinz L.X. et al., 2021. TASL is the SLC15A4-associated adaptor for IRF5 activation by TLR7-9. Nature. 581(7808):316-322.
8. Kayraklioglu N. et al., 2021. CpG oligonucleotides as vaccine adjuvants. DNA Vaccines: Methods and Protocols. Methods in Molecular Biology. Vol. 2197. p51-77.
9. Kumar V., 2021. The trinity of cGAS, TLR9, and ALRs: guardians of the cellular galaxy against host-derived self-DNA. Front. Immunol. 11:624597.
10. Bauer S. et al., 2001. Human TLR9 confers responsiveness to bacterial DNA via species-specific CpG motif recognition. Proc Natl Acad Sci USA, 98(16):9237-42.

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Citations

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