InvivoGen‘s E. coli competent strains have been designed to include genotypes that make them efficient and convenient.
Different Strains for Different Applications InvivoGen provides two different E. coli competent strains that offer distinct characteristics suitable for a particular application : - GT115 cells are specifically designed for cloning and propagation of plasmids containing hairpin structures and the R6K gamma origin of replication, such as pCpG-siRNA plasmids. - GT116 cells are specifically designed for cloning and propagation of shRNA-expressing plasmids which contain hairpin structures, such as psiRNA™ plasmids.
Two preparation are available The strains are made chemically competent by an optimized procedure followed by transformation efficiency verification and provided frozen (ChemiComp) or lyophilized (LyoComp).
- ChemiCompE. coli are chemically competent bacteria provided frozen. Their high transformation efficiency makes them ideal for cloning and plasmid propagation. ChemiComp E. coli are shipped on dry ice. - LyoCompE. coli are chemically competent bacteria that have been lyophilized using a proprietary method. LyoComp E. coli are easy to handle and more stable than standard competent cells. They are shipped at room temperature eliminating the need of costly dry ice shipping. Their competency is sufficient for cloning and propagation of siRNA-expressing plasmids.
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Description
These two strains derive from a common parental strain that features many useful genetic markers making them also versatile strains. These isogenic strains contain genetic modifications which are introduced using an elaborate technique of homologous recombination. This technique allows the generation of targeted deletions or insertions in the E. coli genome.
The dcm gene encodes a DNA methylase that methylates the internal cytosine residues in the recognition sequence 5‘-C*CAGG-3‘ or 5‘-C*CTGG-3‘. This methylation which is not found in vertebrates confers a bacterial signature to DNA prepared in E. coli making it prone to recognition as foreign DNA by the host immune system. Mutation of dcm gene diminishes the immunostimulatory effects of plasmid DNAs.
The pir gene encodes the R6K specific initiator protein π which is required for the replication of plasmids harboring the R6K gamma origin of replication, such as the pCpG plasmid family. The uidA::pir-116 mutant is the result of the integration of a mutant pir gene in the uidA locus. This mutant gene increases plasmid copy number several fold.
The sbcC and sbcD genes encode a dimeric protein called SbcCD that recognizes and cleaves hairpins rendering plasmids with hairpin structures particularly unstable in E. coli. Deletion of the sbcCD operon significantly improves the number of recombinant clones in plasmids containing hairpin structures.
Significant Genetic Markers
Marker
Description
Significance
dcm
Deletion eliminating Dcm methylase activity
Allows for the production of high quality plasmid DNA
endA1
Mutation inactivating endonuclease 1, a potent and non-specific enzyme
Improves the quality of purified plasmid DNA
hsdR
Restriction endonuclease mutation abolishing restriction and modification (r-, m-)
Permits introduction of DNA coming from non-E. coli sources such as PCR amplified DNA
lacZΔM15
Defective Φ80 prophage carrying a partial deletion of LacZ that allows α-complementation
Allows for blue/white color selection of clones when supplemented with X-Gal
mcrA, mcrBC
Mutation abolishing degradation of DNA with methylated cytosine
Allows more efficient cloning of 5-methylcytosine containing DNA
mrr
Mutation eliminating restriction of DNA containing 6-methyladenine or 6-methylcytosine
Allows more efficient cloning of DNA containing methyladenine residues
recA
Homologous recombination deficiency
Transformed DNA will not recombine with host DNA ensuring the stability of inserts
uidA::pir-116
pir gene integrated in the uidA sequence
Allows for high copy number of plasmids containing the R6Kγ origin of replication
sbcC-sbcD
Deletion eliminating the recognition and cleavage of hairpin structures
Increases the stability of hairpin structures and improves the number of recombinant clones
ChemiComp E.coli
ChemiComp GT115
(Δdcm, uidA::pir-116, sbcCD)
ChemiComp E. coli are shipped on dry ice. Transformation efficiency: 0.1-1 x 109 cfu/µg
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Description
ChemiComp GT115 cells are high efficiency chemically competent cells specifically designed for cloning and propagation of plasmids containing hairpin structures and the R6K gamma origin of replication, such as pCpG-siRNA plasmids. Transformation efficiency: 0.1-1 x 109 cfu/µg
Contents and Storage
ChemiComp GT115 cells are provided as 100 µl or 200 µl aliquots. ChemiComp cells are shipped on dry ice. Upon receipt, store ChemiComp cells at -80°C. ChemiComp cells are stable for at least 6 months when properly stored.
ChemiComp E. coli are shipped on dry ice. Transformation efficiency: 0.1-1 x 109 cfu/µg
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Description
ChemiComp GT116 cells are high efficiency chemically competent cells specifically designed for cloning and propagation of shRNA-expressing plasmids which contain hairpin structures, such as psiRNA™ plasmids. Transformation efficiency: 0.1-1 x 109 cfu/µg
Contents and Storage
ChemiComp GT116 cells are provided as 100 µl or 200 µl aliquots. ChemiComp cells are shipped on dry ice. Upon receipt, store ChemiComp cells at -80°C. ChemiComp cells are stable for at least 6 months when properly stored.
LyoComp GT115 cells are recommended for cloning and propagation of plasmids containing hairpin structures and the R6K gamma origin of replication, such as pCpG-siRNA plasmids. Transformation efficiency: 1 x 106 cfu/µ
Contents and Storage
LyoComp E. coli are provided as 4 or 5 vials, each containing the equivalent of 0.1 or 0.2 ml competent cells for GT115 and 0.5 ml or 1 ml competent cells for GT116. Cells are shipped at room temperature. Upon receipt, store LyoComp E. coli at -20°C. Cells are stable for at least 6 months when properly stored.
LyoComp GT116 cells are recommended for cloning and propagation of plasmids containing hairpin structures, such as psiRNA™ plasmids. Transformation efficiency: 1 x 106 cfu/µ
Contents and Storage
LyoComp E. coli are provided as 4 or 5 vials, each containing the equivalent of 0.1 or 0.2 ml competent cells for GT115 and 0.5 ml or 1 ml competent cells for GT116. Cells are shipped at room temperature. Upon receipt, store LyoComp E. coli at -20°C. Cells are stable for at least 6 months when properly stored.
Disclaimer: Our products are provided for research purpose only. Commercial applications may require licensing from third parties.
Note that the sequence of available ORFs provided by InvivoGen can differ from a given reference Genbank record due to genetic variations
and/or alternative splicing. Customers should verify that the version of a gene sold by InvivoGen is suitable for the customer needs.